References

•  Noffisat O. Oki ,
•  Mark D. Nelms ,
•  Shannon M. Bell ,
•  Holly M. Mortensen ,
•  Stephen W. Edwards
 

Accelerating Adverse Outcome Pathway Development Using Publicly Available Data Sources

Current Environmental Health Reports ¦ 2016

                                                                       

•  Qiaozi Gao ,
•  Elisabeth Ostendorf ,
•  Jeffrey A Cruz ,
•  Rong Jin ,
•  David M Kramer ,
•  Jin Chen
 

Inter-functional analysis of high-throughput phenotype data by non-parametric clustering and its application to photosynthesis

Bioinformatics ¦ 2015

                                                                       

•  K. N. Ganapathy ,
•  P. Rajendrakumar
 

Sorghum Molecular Breeding: Chapter 7 - Post-genome Sequencing Developments

Springer ¦ 2015

                                                                       

•  Kamal Taha ,
•  Mohammed Al Zaabi
 

BioHCDP: A Hybrid Constituency-Dependency Parser for Biological NLP information extraction

2014 IEEE Symposium on Computational Intelligence and Data Mining (CIDM) ¦ 2014

                                                                       

•  Deepthi Mannil ,
•  Ingo Vogt ,
•  Jeanette Prinz ,
•  Monica Campillos
 

Organ system heterogeneity DB: a database for the visualization of phenotypes at the organ system level

Nucleic Acids Research ¦ 2014

                                                                       

•  Hagit Shatkay ,
•  Scott Brady ,
•  Andrew Wong
 

Text as data: Using text-based features for proteins representation and for computational prediction of their characteristics

Methods ¦ 2014

                                                                       

•  Anika Oellrich ,
•  Julius Jacobsen ,
•  Irene Papatheodorou ,
•  Damian Smedley
 

Using association rule mining to determine promising secondary phenotyping hypotheses

Bioinformatics ¦ 2014

                                                                       

•  Daniel Lobo ,
•  Erica B. Feldman ,
•  Michelle Shah ,
•  Taylor J. Malone ,
•  Michael Levin
 

A bioinformatics expert system linking functional data to anatomical outcomes in limb regeneration

Regeneration ¦ 2014

                                                                       

•  Daniel Lobo ,
•  Taylor J. Malone ,
•  Michael Levin
 

Towards a bioinformatics of patterning: a computational approach to understanding regulative morphogenesis

Biology Open ¦ 2012

                                                                       

•  B. Hulsegge ,
•  M.A. Smits ,
•  M.F.W. te Pas ,
•  H. Woelders
 

Contributions to an animal trait ontology

Journal of Animal Science ¦ 2012

                                                                       

•  E. Kyzar ,
•  I. Zapolsky ,
•  J. Green ,
•  S. Gaikwad ,
•  M. Pham ,
•  C. Collins ,
•  A. Roth ,
•  A.M. Stewart ,
•  P. St-Pierre ,
•  B. Hirons ,
•  A.V. Kalueff
 

The Zebrafish Neurophenome Database (ZND): A dynamic open-access resource for zebrafish neurophenotypic data

Zebrafish ¦ 2012

                                                                       

•  M.L. Marazita
 

The evolution of human genetic studies of cleft lip and cleft palate

Annual Review of Genomics and Human Genetics ¦ 2012

                                                                       

•  P.N. Schofield ,
•  R. Hoehndorf ,
•  G.V. Gkoutos
 

Mouse genetic and phenotypic resources for human genetics

Human Mutation ¦ 2012

                                                                       

•  C.L. Smith ,
•  J.T. Eppig
 

The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data

Mammalian Genome ¦ 2012

                                                                       

•  S. Zhang ,
•  Z. Chang ,
•  Z. Li ,
•  H. DuanMu ,
•  Z. Li ,
•  K. Li ,
•  Y. Liu ,
•  F. Qiu ,
•  Y. Xu
 

Calculating phenotypic similarity between genes using hierarchical structure data based on semantic similarity

Gene ¦ 2012

                                                                       

•  Rosangela Sozzani ,
•  Philip N Benfey
 

High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype

Genome Biology ¦ 2011

                                                                       

•  Can Alkan ,
•  Emidio Capriotti ,
•  Eleazar Eskin ,
•  Fereydoun Hormozdiari ,
•  Maricel G. Kann
 

PSB 2011 Tutorial: Personal Genomics

Pacific Symposium on Biocomputing ¦ 2011

                                                                       

•  Isabella Gashaw ,
•  Peter Ellinghaus ,
•  Anette Sommer ,
•  Khusru Asadullah
 

What makes a good drug target?

Drug Discovery Today ¦ 2011

                                                                       

•  D.P. Berry ,
•  K.G. Meade ,
•  M.P. Mullen ,
•  S. Butler ,
•  M.G. Diskin ,
•  D. Morris ,
•  C.J. Creevey
 

The integration of omic disciplines and systems biology in cattle breeding

Animal ¦ 2011

                                                                       

•  P.N. Schofield ,
•  J.P. Sundberg ,
•  R. Hoehndorf ,
•  G.V. Gkoutos
 

New approaches to the representationand analysis of phenotype knowledge in human diseases and their animalmodels

Briefings in Functional Genomics ¦ 2011

                                                                       

• Edited by William C. S. Cho
 

An Omics Perspective on Cancer Research

Springer ¦ 2010

                                                                       

•  Paul N. Schofield ,
•  Georgios V. Gkoutos ,
•  Michael Gruenberger ,
•  John P. Sundberg ,
•  John M. Hancock
 

Phenotype ontologies for mouse and man: bridging the semantic gap

Dis. Model. Mech. ¦ 2010

                                                                       

•  Abraham Bernstein ,
•  David R. Karger ,
•  Tom Heath ,
•  Lee Feigenbaum ,
•  Diana Maynard
 

The Semantic Web - ISWC 2009: 8th International Semantic Web Conference

Springer ¦ 2009

                                                                       

•  B.M. Malone ,
•  A.D. Perkins ,
•  S.M. Bridges
 

Integrating phenotype and gene expression data for predicting gene function

BMC Bioinformatics ¦ 2009

                                                                       

•  Amrita Pati ,
•  Ying Jin ,
•  Karsten Klage ,
•  Richard F. Helm ,
•  Lenwood S. Heath ,
•  Naren Ramakrishnan
 

CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining

Nucl. Acids Res. ¦ 2008

                                                                       

•  J.P. Sundberg ,
•  B.A. Sundberg ,
•  P. Schofield
 

Integrating mouse anatomy and pathology ontologies into a phenotyping database: Tools for data capture and training

Mammalian Genome ¦ 2008

                                                                       

•  M.S. Orloff ,
•  C. Eng
 

Genetic and phenotypic heterogeneity in the PTEN hamartoma tumour syndrome

Oncogene ¦ 2008

                                                                       

•  Jonatha Gott
 

RNA Modification

Academic Press ¦ 2007

                                                                       

•  Steven Vvan Vooren ,
•  Bert Coessens ,
•  Bart De Moor ,
•  Yves Moreau ,
•  Joris R. Vermeesch
 

Array comparative genomic hybridization and computational genome annotation in constitutional cytogenetics: suggesting candidate genes for novel submicroscopic chromosomal imbalance syndromes

Genetics in Medicine ¦ 2007

                                                                       

•  John M. Hancock ,
•  Ann-Marie Mallon
 

Phenobabelomics—mouse phenotype data resources

Briefings in Functional Genomics and Proteomics ¦ 2007

                                                                       

•  Maricel G. Kann
 

Protein interactions and disease: computational approaches to uncover the etiology of diseases

Brief Bioinform ¦ 2007

                                                                       

•  V.d. Crecy-Lagard
 

Identification of Genes Encoding tRNA Modification Enzymes by Comparative Genomics

Methods in Enzymology ¦ 2007

                                                                       

•  S.Y. Kim ,
•  W.C. Hahn
 

Cancer genomics: Integrating form and function

Carcinogenesis ¦ 2007

                                                                       

•  K.M. Zbuk ,
•  C. Eng
 

Cancer phenomics: RET and PTEN as illustrative models

Nature Reviews Cancer ¦ 2007

                                                                       

•  T.A.L. Snoeren ,
•  P.W. De Jong ,
•  M. Dicke
 

Ecogenomic approach to the role of herbivore-induced plant volatiles in community ecology

Journal of Ecology ¦ 2007

                                                                       

•  A.V. Singh ,
•  E.C. Rouchka ,
•  G.A. Rempala ,
•  C.D. Bastian ,
•  T.B. Knudsen
 

Integrative database management for mouse development: Systems and concepts

Birth Defects Research Part C - Embryo Today: Reviews ¦ 2007

                                                                       

•  Marcel Dicke
 

Chemical Ecology: From Gene to Ecosystem

Springer ¦ 2006

                                                                       

•  Aylwin Ng ,
•  Borisas Bursteinas ,
•  Qiong Gao ,
•  Ewan Mollison ,
•  Marketa Zvelebil
 

Resources for integrative systems biology: from data through databases to networks and dynamic system models

Brief Bioinform ¦ 2006

                                                                       

•  K. Abe ,
•  H. Fuchs ,
•  T. Lisse ,
•  W. Hans ,
•  M.H. De Angelis
 

New ENU-induced semidominant mutation, Ali18, causes inflammatory arthritis, dermatitis, and osteoporosis in the mouse

Mammalian Genome ¦ 2006

                                                                       

•  M.W. Lutz ,
•  P.V. Warren ,
•  R.W. Gill ,
•  D.B. Searls
 

Managing genomic and proteomic knowledge

Drug Discovery Today: Technologies ¦ 2005